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The state of the microbiota of the respiratory tract in patients with tuberculosis of the respiratory system: literature review

https://doi.org/10.29413/ABS.2025-10.3.20

Abstract

Background. Tuberculosis is one of the leading infectious diseases that claim millions of lives every year. In the Russian Federation, over the past 10 years, there has been a steady decrease in the incidence and mortality from tuberculosis. The effectiveness of the treatment of respiratory tuberculosis depends on the genetics and immunology of the host, environmental factors, drug resistance of the pathogen (MDR/XDR), the presence of concomitant comorbid pathology (TB/HIV). However, the state of the microbiota continues to be poorly studied, but an important factor.
The aim. To study the data of the world literature on the state of microbiocenosis of the respiratory tract in patients with tuberculosis of the respiratory system.
Methods. The search and analysis of literary sources in international and domestic databases (Google Scholar, PubMed, eLibrary) for the period 2018–2023 were carried out.
Discussion. To assess the microbiota of the respiratory tract, the 16s sequencing method of studying the species diversity of microorganisms is most successfully used. It has been proven that a violation of the microbiocenosis of the respiratory tract, namely the formation of dysbiosis against the background of persistent tuberculosis infection, can contribute to the development of bronchopulmonary complications. Currently, there is a wide variety of microorganisms inhabiting the respiratory tract of patients with tuberculosis of the respiratory system, while markers of pulmonary dysbiosis have not been established. Changes in the microbiota of the respiratory system depend on a number of factors: the presence/absence of bacterial release, sensitivity/resistance of the causative agent of tuberculosis to antibacterial drugs, chemotherapy regimen, etc.
Conclusion. The composition of the microbiota of the respiratory tract in patients with tuberculosis of the respiratory system has not been studied enough. The available research is fragmented and not conceptual in nature. However, epidemiological realities (pandemics, the presence of tuberculosis–endemic countries and regions, the trend towards an increase in drug-resistant forms of tuberculosis, the high incidence of bronchopulmonary pathology of non-specific etiology in patients with pulmonary tuberculosis) necessitate representative studies on this topic.

About the Authors

S. I. Kayukova
Russian National Research Medical University named after N. I. Pirogov of the Ministry of Health of the Russian Federation
Russian Federation

Svetlana I. Kayukova – Dr. Sc. (Med.), Professor 

Ostrovityanova str., 1, Moscow 117997



I. A. Vasilyeva
Russian National Research Medical University named after N. I. Pirogov of the Ministry of Health of the Russian Federation; National Medical Research Center of Phthisiopulmonology and Infectious Diseases of the Ministry of Health of the Russian Federation
Russian Federation

Irina A. Vasilyeva – Dr. Sc. (Med.), Professor, Director, Chief phthisiologist of the Ministry of Health of the Russian Federation, Head of the Department of phthisiology 

Ostrovityanova str., 1, Moscow 117997;
Dostoevsky str., 4, building 1, Moscow 127473



N. S. Mironov
Russian National Research Medical University named after N. I. Pirogov of the Ministry of Health of the Russian Federation
Russian Federation

Nikita S. Mironov – senior laboratory assistant at the Department of phthisiology of the Phthisiology Institute of Clinical Medicine 

Ostrovityanova str., 1, Moscow 117997



E. A. Gugueva
Sechenov First Moscow State Medical University of the Ministry of Health of the Russian Federation
Russian Federation

Ekaterina A. Gugueva – student of the Faculty of Medicine 

Trubetskaya str., 8, building 2, Moscow 119991



T. I. Sharkova
Russian National Research Medical University named after N. I. Pirogov of the Ministry of Health of the Russian Federation
Russian Federation

Tatyana I. Sharkova – Cand. Sc. (Med.), Associate Professor of the Department of Phthisiology at the Institute of Clinical Medicine 

Ostrovityanova str., 1, Moscow 117997



M. V. Sinitsyn
Russian National Research Medical University named after N. I. Pirogov of the Ministry of Health of the Russian Federation; National Medical Research Center of Phthisiopulmonology and Infectious Diseases of the Ministry of Health of the Russian Federation
Russian Federation

Mikhail V. Sinitsyn – Dr. Sc. (Med.), Deputy Chief Physician for Surgery, thoracic surgeon; Professor of the Department of Phthisiology at the Institute of Clinical Medicine 

Ostrovityanova str., 1, Moscow 117997;
Dostoevsky str., 4, building 1, Moscow 127473



References

1. Zhao L, Luo JL, Ali MK, Spiekerkoetter E, Nicolls MR. The human respiratory microbiome: current understandings and future directions. Am J Respir Cell Mol Biol. 2023; 68(3): 245-255. doi: 10.1165/rcmb.2022-0208TR

2. Hong BY, Maulén NP, Adami AJ, Granados H, Balcells ME, Cervantes J. Microbiome changes during tuberculosis and antituberculous therapy. Clin Microbiol Rev. 2016; 29(4): 915-26. doi: 10.1128/CMR.00096-15

3. WHO. URL: https://www.who.int/ru/news-room/factsheets/detail/tuberculosis, 2023. [Date of access: October 10, 2024].

4. Ministry of Health of the Russian Federation. Minister of Health of the Russian Federation Mikhail Murashko: Tuberculosis incidence in the Russian Federation is maintained at a historical minimum. 2022. (In Russ.). URL: https://minzdrav.gov.ru/news/2022/03/24/18525-ministr-zdravoohraneniya-rf-mihail-murashko-zabolevaemost-tuberkulezom-v-rf-uderzhivaetsya-na-istoricheskom-minimume. [Date of access: October 15, 2024].

5. Shah T, Shah Z, Baloch Z, XiuMing Cui. The role of microbiota in respiratory health and diseases, particularly in tuberculosis. Biomedicine and Pharmacotherapy. 2021; 143: 112108. doi: 10.1016/j.biopha.2021.112108

6. Zhuo QQ, Zhang XYi, Zhang KH, Chen Ch, Huang Zh, Xu YuZh. The gut and lung microbiota in pulmonary tuberculosis: susceptibility, function, and new insights into treatment. Expert Review of Anti-infective Therapy Volume. 2023, 21(12): 1355-1364. doi: 10.1080/14787210.2023.2283036

7. Tarashi S, Ahmadi Badi S, Moshiri A, Nasehi M, Fateh A, Vaziri F, Siadat SD. The human microbiota in pulmonary tuberculosis: not so innocent bystanders. Tuberculosis. 2018; 113: 215-221. doi: 10.1016/j.tube.2018.10.010

8. Hong Bo-Y, Paulson JN, Stine OC, Weinstock GM, Cervantes JL. Meta-analysis of the lung microbiota in pulmonary tuberculosis. Tuberculosis. 2018; 109: 102-108. doi: 10.1016/j.tube.2018.02.006

9. Xiao GH, Cai Zh, Guo QL, Ye TSh, Tang YiM, Guan PK, et al . Insights into the unique lung microbiota profile of pulmonary tuberculosis patients using metagenomic next-generation sequencing. Microbiology spectrum. 2022; 10(1): e0190121. doi: 10.1128/spectrum.01901-21

10. Gupta N, Kumar R, Agrawal B. New Players in Immunity to Tuberculosis: the host microbiome, lung epithelium, and innate immune cells. Frontiers Immunology. 2018; 9: 709. doi: 10.3389/fimmu.2018.00709

11. Naidoo ChC, Nyawo GR, Wu BG, Walzl G, Warren RM, Segal LN, et al. The microbiome and tuberculosis: state of the art, potential applications, and defining the clinical research agenda. The Lancet Respiratory Medicine. 2019; 7(10): 892-906. doi: 10.1016/S2213-2600(18)30501-0

12. Eshetie S, van Soolingen D. The respiratory microbiota: new insights into pulmonary tuberculosis. BMC Infectious Diseases. 2019; 19(1): 92. doi: 10.1186/s12879-019-3712-1

13. Yatera K, Noguchi Sh, Mukae H. The microbiome in the lower respiratory tract. Respiratory Investigation. 2018; 56(6): 432-439. doi: 10.1016/j.resinv.2018.08.003

14. Comberiati P, Di Cicco M, Paravati F, Pelosi U, Di Gangi A, Arasi S, et al. The Role of gut and lung microbiota in to tuberculosis. Int J Environ Res Public Health. 2021; 21; 18(22): 12220. doi: 10.3390/ijerph182212220

15. Semail N, Suraiya S, Calero R, Mirabal M, Carrillo H, Kamil MHE, et al. Microbial biodiversity in the throats of pulmonary tuberculosis patients and tuberculin skin test (TST) positive and negative healthy individuals in Malaysia. Tuberculosis. 2020; 124: 101965. doi: 10.1016/j.tube.2020.101965

16. Huang Yu, Tang JH, Cai Zh, Qi Yu, Jiang Sh. Alterations in the intestinal microbiota associated with active tuberculosis and latent tuberculosis infection. Heliyon. 2023; 11; 9(11): e22124. doi: 10.1016/j.heliyon.2023.e22124

17. Ghosh A, Saha S. Meta-analysis of sputum microbiome studies identifies airway disease-specific taxonomic and functional signatures. Journal of medical microbiology. 2022; 72(12). doi: 10.1099/jmm.0.001617

18. Ticlla MR, Hella J, Hiza H, Sasamalo M, Mhimbira F, Rutaihwa LK, et al. The Sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study. Frontier Microbiology. 2021; 20(12): 633396. doi: 10.3389/fmicb.2021.633396

19. Cai XSh, Luo Ya, Zhang YuL, Lin Yu, Wu BT, Cao ZhZh, et al. Airway microecology in rifampicin-resistant and rifampicin-sensitive pulmonary tuberculosis patients. BMC Microbiology. 2022; 22(1): 286. doi: 10.1186/s12866-022-02705-9

20. Sala C, Benjak A, Goletti D, Banu S. Multicenter analysis of sputum microbiota in tuberculosis patients. PLoS One. 2020; 15(10): e0240250. doi: 10.1371/journal.pone.0240250

21. Vázquez-Pérez JA, Carrillo CO, Iñiguez-García MA, Romero-Espinoza I, Márquez-García JE, Falcón LI, et al. Alveolar microbiota profile in patients with human pulmonary tuberculosis and interstitial pneumonia. Microbial Pathogenesis. 2020; 139: 103851. doi: 10.1016/j.micpath.2019.103851

22. Hu YoF, Cheng M, Liu B, Dong J, Sun L, Yang J, et al. Metagenomic analysis of the lung microbiome in pulmonary tuberculosis – a pilot study. Emerg Microbes Infect. 2020; 9(1): 1444–1452. doi: 10.1080/22221751.2020.1783188

23. Dandachi I, Azar E, Hamouch R, Maliha P, Abdallah S, Kanaan E, et al. Acinetobacter spp in a Third World Country with socio-economic and immigrants challenges. J Infect Dev Ctries. 2019; 13(11): 948-955. doi: 10.3855/jidc.11341

24. Mea HJ, Voon Chen Yong P, Wong EH. An overview of Acinetobacter baumannii pathogenesis: motility, adherence and biofilm formation. Microbiological research. 2021; 247: 126722. doi: 10.1016/j.micres.2021.126722

25. Ding L, Liu YaM, Wu XR, Wu MH, Luo XQ, Ouyang H, et al. Pathogen metagenomics reveals distinct lung microbiota signatures between bacteriologically confirmed and negative tuberculosis patients. Frontiers Cellular and Infection Microbiology. 2021; 11: 708827. doi: 10.3389/fcimb.2021.708827

26. Hu YF, Kang Yi, Liu X, Cheng M, Dong J, Sun L, et al. Distinct lung microbial community states in patients with pulmonary tuberculosis. Science China Life Sciences. 2020; (10): 1522-1533. doi: 10.1007/s11427-019-1614-0

27. Du WL, Zhao YiL, Zhang L, Che JL, Liu ZCh, Li K, et al. Bacteriomes in lesions of pulmonary tuberculosis and its association with status of Mycobacterium tuberculosis excretion. BMC Microbiology. 2022; 22(1): 280. doi: 10.1186/s12866-022-02698-5

28. Mori G, Morrison M, Blumenthal A. Microbiome-immune interactions in tuberculosis. PLoS Pathogens. 2021; 17(4): e1009377. doi: 10.1371/journal.ppat.1009377

29. Kateete DP, Mbabazi MM, Nakazzi F, Katabazi FA, Kigozi E, Ssengooba W, et al. Sputum microbiota profiles of treatment-naïve TB patients in Uganda before and during first-line therapy. Scientific reports. 2021; 11(1): 24486. doi: 10.1038/s41598-021-04271-y

30. Musisi E, Wyness A, Eldirdiri S, Dombay E, Mtafya B, Ntinginya NE, et al. Effect of seven anti-tuberculosis treatment regimens on sputum microbiome: a retrospective analysis of the HIGHRIF study 2 and PanACEA MAMS-TB clinical trials. The Lancet Microbe. 2023; 4(11): e913-e922. doi: 10.1016/S2666-5247(23)00191-X

31. Hazra D, Chawla K, Fayaz SM, Sintchenko V, Magazine R, Martinez E, et al. The impact of anti-tuberculosis treatment on respiratory tract microbiome in pulmonary tuberculosis. Microbes Infect. 2024; 27(3): 105432. doi: 10.1016/j.micinf.2024.105432

32. Lin DZ, Wang XZh, Li YaYu, Wang W, Li YuM, Yu XL, et al. Sputum microbiota as a potential diagnostic marker for multidrug-resistant tuberculosis. International journal of Medicine Science. 2021; 18(9): 1935–1945. doi: 10.7150/ijms.53492

33. Ueckermann V, Lebre P, Geldenhuys J, Hoosien E, Cowan D, van Rensburg LJ, et al. The lung microbiome in HIV-positive patients with active pulmonary tuberculosis. Sci Rep. 2022; 12(1): 8975. doi: 10.1038/s41598-022-12970-3


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Kayukova S.I., Vasilyeva I.A., Mironov N.S., Gugueva E.A., Sharkova T.I., Sinitsyn M.V. The state of the microbiota of the respiratory tract in patients with tuberculosis of the respiratory system: literature review. Acta Biomedica Scientifica. 2025;10(3):191-200. (In Russ.) https://doi.org/10.29413/ABS.2025-10.3.20

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